Methyl 2-amino-6-bromonicotinate is primarily used as an intermediate in organic synthesis, particularly in the development of pharmaceuticals and agrochemicals. Its structure makes it a valuable building block for creating complex molecules, especially in the synthesis of heterocyclic compounds. It is often employed in the production of active pharmaceutical ingredients (APIs) for drugs targeting various therapeutic areas, including anti-inflammatory, antiviral, and anticancer agents. Additionally, it serves as a precursor in the synthesis of herbicides and pesticides, contributing to the development of crop protection solutions. Its bromine and ester functional groups allow for versatile chemical modifications, making it a key component in research and industrial applications.