tert-Butyl ((6-chloropyrazin-2-yl)methyl)carbamate is primarily used in organic synthesis and pharmaceutical research. It serves as a key intermediate in the development of various biologically active compounds, particularly in the synthesis of drugs targeting specific enzymes or receptors. Its structure, featuring a chloropyrazine moiety, makes it valuable for constructing complex molecules with potential therapeutic applications, such as antiviral or anticancer agents. Additionally, it is utilized in the preparation of peptide-based compounds, where the tert-butyl carbamate group acts as a protecting group for amines during multi-step synthetic processes. This chemical is also explored in agrochemical research for designing novel pesticides or herbicides due to its reactivity and structural versatility.