Methyl chlorogenate is used as an intermediate in organic synthesis, particularly in the development of pharmaceuticals and agrochemicals. It exhibits stability under various reaction conditions, making it suitable for esterification and protection group strategies. Derived from chlorogenic acid, it is also investigated for its potential bioactive properties in natural product derivatives, including antioxidant and anti-inflammatory applications. Employed in research settings to modify molecular structures for enhanced solubility or metabolic stability.