Quinoxalin-6-ylmethanamine is primarily utilized in the field of medicinal chemistry and pharmaceutical research. It serves as a key building block in the synthesis of various biologically active compounds, particularly those targeting neurological disorders and cancer. Its quinoxaline core structure is often incorporated into molecules designed to interact with specific enzymes or receptors, making it valuable in drug discovery. Additionally, it is explored for its potential in developing fluorescent probes and imaging agents due to its unique chemical properties. Researchers also investigate its role in creating antimicrobial and antiviral agents, leveraging its structural versatility to enhance therapeutic efficacy.