3,5-Difluorobenzylamine is widely used as a key intermediate in the synthesis of various pharmaceutical compounds. It plays a crucial role in the development of active pharmaceutical ingredients (APIs), particularly in the creation of drugs targeting neurological disorders and cancer. Its unique structure allows it to act as a building block for molecules that interact with specific biological targets, enhancing drug efficacy and selectivity.

In the agrochemical industry, this compound is utilized in the production of pesticides and herbicides. Its incorporation into these formulations helps improve their effectiveness in controlling pests and weeds, contributing to higher agricultural yields.

Additionally, 3,5-Difluorobenzylamine is employed in organic synthesis for the preparation of complex organic molecules. Its reactivity and stability make it a valuable reagent in constructing diverse chemical structures, which are further explored in material science and fine chemical manufacturing.