(2-Chloro-6-methoxypyridin-4-yl)methanamine is primarily used in the field of organic synthesis and pharmaceutical research. It serves as a key intermediate in the development of various biologically active compounds. Its structure, featuring both chloro and methoxy substituents on the pyridine ring, makes it a versatile building block for designing molecules with potential therapeutic applications.

In medicinal chemistry, this compound is often utilized to create derivatives that may exhibit pharmacological properties, such as antimicrobial, antiviral, or anti-inflammatory effects. Researchers also explore its use in the synthesis of agrochemicals, where it can contribute to the development of new pesticides or herbicides. Additionally, its unique chemical structure allows it to be incorporated into complex molecules for use in material science, particularly in the design of advanced polymers or coatings.